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Molecule

Adapted from Wikipedia · Discoverer experience

The Crab Nebula is a beautiful cloud of glowing gas formed from the explosion of a star, showing incredible colors from different elements in space.

A molecule is a group of two or more atoms held together by attractive forces known as chemical bonds. These tiny structures are the building blocks of all matter, from the air we breathe to the water we drink. Molecules can be made of atoms of the same element, like the oxygen molecule (O2), or they can combine atoms of different elements, such as in water (H2O), which is made of two hydrogen atoms and one oxygen atom.

Atomic force microscopy (AFM) image of a PTCDA molecule, in which the five six-carbon rings are visible

The study of molecules began hundreds of years ago, with scientists like Robert Boyle, Amedeo Avogadro, Jean Perrin, and Linus Pauling helping to uncover their secrets. Today, understanding molecules is important in fields like quantum physics, organic chemistry, and biochemistry, where scientists explore how these tiny structures influence the world around us. Molecules help explain everything from the way living things grow to the properties of everyday materials.

Etymology

The word "molecule" comes from an old Latin word, "moles", which means a small unit of mass. It traveled through French, becoming molécule, and was popularised by scientists like René Descartes. This term helped people talk about tiny parts of matter in a new way.

History

Main article: History of molecular theory

Marc Antoine Auguste Gaudin's volume diagrams of molecules in the gas phase (1833)

The idea of what a molecule is has changed over time as we learned more about how atoms work together. Long ago, thinkers like Leucippus and Democritus believed everything was made of tiny pieces called atoms. Later, Robert Boyle suggested that matter is made of clusters of particles that can rearrange during chemical reactions.

The word "molecule" was first used by Amedeo Avogadro, who suggested that the smallest pieces of gases are actually groups of atoms stuck together. In the 1920s, scientists used new ideas from physics to explain how atoms bond together to form molecules. This helped us understand the shapes and properties of different molecules.

Molecular science

The study of molecules is known as molecular chemistry or molecular physics, depending on whether we are focusing on chemistry or physics. Molecular chemistry looks at how molecules interact to form and break chemical bonds, while molecular physics studies their structure and properties. In simple terms, a molecule is a stable group of two or more atoms stuck together. Sometimes, charged groups of atoms called polyatomic ions can also be thought of as molecules. The term "unstable molecule" refers to very reactive and short-lived groups of atoms, such as radicals or molecular ions.

Prevalence

Molecules are everywhere! They make up most of the air we breathe and the water in our oceans. Many important things in our bodies, like proteins and DNA, are molecules too.

But not everything is made of molecules. Many solid things, like rocks, sand, and metals, are not made of molecules. Instead, they are made of tiny building blocks that repeat in patterns. For example, diamond and quartz are made of repeating patterns, not separate molecules.

Bonding

Molecules are held together by covalent bonding, where atoms share pairs of electrons to stay connected. Many non-metal elements, like hydrogen, exist as molecules rather than single atoms.

Another way atoms bond is through ionic bonding. This happens when one atom gives up electrons to another, creating charged particles called cations and anions. These charges attract each other, forming a bond. This type of bonding usually makes solid materials, but can sometimes create separate molecules when heated or turned into gas.

Molecular size

Most molecules are far too small to see without special tools, but some very large molecules, like DNA, can actually be big enough to see. Small building block molecules are measured in angstroms, which are very tiny units—about one billionth of a meter. We usually can't see single molecules with regular light, but special tools like an atomic force microscope can sometimes show us their shapes.

The smallest molecule is hydrogen, made of two atoms stuck together. It is very tiny, with a distance between its atoms of just 0.74 angstroms. Molecules can have different sizes when they are dissolved in water or other liquids.

Molecular formulas

Main article: Chemical formula

3D (left and center) and 2D (right) representations of the terpenoid molecule atisane

A chemical formula is a way to show what a molecule is made of using letters and numbers. These letters are the symbols for the elements, like H for hydrogen or O for oxygen. Sometimes we also use numbers to show how many atoms of each element are in the molecule. For example, the formula for water is H2O, meaning each water molecule has two hydrogen atoms and one oxygen atom.

There are different kinds of formulas. One is called the empirical formula, which shows the simplest whole-number ratio of the atoms in a molecule. Another is the molecular formula, which tells exactly how many atoms of each element are in a single molecule. Sometimes, different molecules can have the same molecular formula but arranged in different ways—these are called isomers.

Molecular geometry

Structure and STM image of a "cyanostar" dendrimer molecule

Main article: Molecular geometry

Molecules have set shapes with certain distances between atoms and angles between the bonds. These shapes, along with the chemical formula of a molecule, help decide what the molecule can do and how it behaves. Molecules that have the same formula but different shapes, called isomers, can have very different properties because of how their atoms are arranged.

Molecular spectroscopy

Main article: Spectroscopy

Hydrogen can be removed from individual H2TPP molecules by applying excess voltage to the tip of a scanning tunneling microscope (STM, a); this removal alters the current–voltage (I–V) curves of TPP molecules, measured using the same STM tip, from diode like (red curve in b) to resistor like (green curve). Image (c) shows a row of TPP, H2TPP and TPP molecules. While scanning image (d), excess voltage was applied to H2TPP at the black dot, which instantly removed hydrogen, as shown in the bottom part of (d) and in the rescan image (e). Such manipulations can be used in single-molecule electronics.

Molecular spectroscopy is the study of how molecules respond to energy. When we send signals of certain energy or frequency toward molecules, we can learn about them by observing how they absorb or emit energy. This helps scientists identify molecules and understand their structure.

Different types of spectroscopy look at different actions of molecules. For example, microwave spectroscopy measures how molecules rotate, which helps identify molecules in space. Infrared spectroscopy looks at how molecules vibrate, which can tell us what kinds of bonds are present. Other types of spectroscopy study how electrons in molecules behave, helping us understand the arrangement of atoms.

Theoretical aspects

The study of molecules uses ideas from quantum mechanics to help us understand how atoms stick together to form chemical bonds. The simplest molecule is the hydrogen molecule-ion, H2+, made of two protons and one electron. Because it has only one electron, scientists can solve its behavior more easily.

Scientists define a molecule as a group of atoms that stick together strongly enough to act like one unit. This includes some very weakly bound groups, like the helium dimer, He2, which only stays together at very low temperatures. A molecule isn’t a basic piece of nature like an elementary particle; it’s a useful idea that chemists use to talk about how atoms interact.

Main article: theoretical chemistry

Images

A close-up image of a special molecule called TOAT, showing its structure on a copper surface.
A beautiful butterfly called Issoria lathonia resting on colorful flowers.
A 3D model showing the structure of nitrous oxide, a chemical compound made of nitrogen and oxygen atoms.
A 3D model showing the structure of ethanol, a type of chemical commonly studied in science classes.
A 3D model showing the structure of a Buckminsterfullerene molecule, made up of carbon atoms connected in a pattern resembling a soccer ball.
Astronauts aboard Apollo 8 saw this beautiful view of Earth rising over the Moon’s surface during their historic mission in 1968.
A scientific image showing the structure of pentacene molecules on a metal surface, viewed using a special microscope.
Animation showing how sodium and fluorine atoms form an ionic bond to create sodium fluoride.

This article is a child-friendly adaptation of the Wikipedia article on Molecule, available under CC BY-SA 4.0.

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