Safekipedia

DNA and RNA codon tables

Adapted from Wikipedia Β· Adventurer experience

A scientific diagram showing codon relationships that help determine amino acid properties in living things.

A codon table can be used to translate a genetic code into a sequence of amino acids. When proteins are made in a cell by ribosomes, it is messenger RNA (mRNA) that directs protein synthesis. The mRNA sequence is determined by the sequence of genomic DNA. In this context, the standard genetic code is called 'translation table 1' among other tables. It can also be shown in a DNA codon table.

The second codon position best determines amino acid hydrophobicity. Color-coding: hydrophobicity from microenvironment in folded proteins

There are 64 different codons in the genetic code. Most of these codons specify an amino acid. Three special sequences, UAG, UGA, and UAA, known as stop codons, do not code for an amino acid. Instead, they signal the end of the protein being made. In the standard code, the sequence AUGβ€”read as methionineβ€”can serve as a start codon. Along with other signals such as an initiation factor, it begins the process of making a protein. Sometimes, other codons like GUG or UUG can also act as start codons.

The standard table helps translate groups of three nucleotide letters, called triplets, into the corresponding amino acid or signal. There is also an inverse table that works the other way: if you know the amino acid, it can help figure out the possible triplet code. Because multiple codons can code for the same amino acid, special notation from the International Union of Pure and Applied Chemistry is sometimes used, called nucleic acid notation.

Translation table 1

The standard genetic code helps cells make proteins. It reads instructions from DNA and turns them into messages using a molecule called messenger RNA (mRNA). This is like a translation table. It matches sets of three letters, called codons, to special building blocks of proteins named amino acids. Table 1 shows some special start codons, GUG and UUG, that help begin this process.

Amino-acid biochemical propertiesNonpolar (np)Polar (p)Basic (b)Acidic (a)Termination: stop codon *Initiation: possible start codon β‡’
Standard genetic code
1st
base
2nd base3rd
base
UCAG
UUUU(Phe/F) Phenylalanine (np)UCU(Ser/S) Serine (p)UAU(Tyr/Y) Tyrosine (p)UGU(Cys/C) Cysteine (p)U
UUCUCCUACUGCC
UUA(Leu/L) Leucine (np)UCAUAAStop (Ochre) *UGAStop (Opal) *A
UUG β‡’UCGUAGStop (Amber) *UGG(Trp/W) Tryptophan (np)G
CCUUCCU(Pro/P) Proline (np)CAU(His/H) Histidine (b)CGU(Arg/R) Arginine (b)U
CUCCCCCACCGCC
CUACCACAA(Gln/Q) Glutamine (p)CGAA
CUGCCGCAGCGGG
AAUU(Ile/I) Isoleucine (np)ACU(Thr/T) Threonine (p)AAU(Asn/N) Asparagine (p)AGU(Ser/S) Serine (p)U
AUCACCAACAGCC
AUAACAAAA(Lys/K) Lysine (b)AGA(Arg/R) Arginine (b)A
AUG β‡’(Met/M) Methionine (np)ACGAAGAGGG
GGUU(Val/V) Valine (np)GCU(Ala/A) Alanine (np)GAU(Asp/D) Aspartic acid (a)GGU(Gly/G) Glycine (np)U
GUCGCCGACGGCC
GUAGCAGAA(Glu/E) Glutamic acid (a)GGAA
GUG β‡’GCGGAGGGGG
Inverse table for the standard genetic code (compressed using IUPAC notation)
Amino acidRNA codonsCompressedAmino acidRNA codonsCompressed
Ala, AGCU, GCC, GCA, GCGGCNIle, IAUU, AUC, AUAAUH
Arg, RCGU, CGC, CGA, CGG; AGA, AGGCGN, AGR; or
CGY, MGR
Leu, LCUU, CUC, CUA, CUG; UUA, UUGCUN, UUR; or
CUY, YUR
Asn, NAAU, AACAAYLys, KAAA, AAGAAR
Asp, DGAU, GACGAYMet, MAUG
Asn or Asp, BAAU, AAC; GAU, GACRAYPhe, FUUU, UUCUUY
Cys, CUGU, UGCUGYPro, PCCU, CCC, CCA, CCGCCN
Gln, QCAA, CAGCARSer, SUCU, UCC, UCA, UCG; AGU, AGCUCN, AGY
Glu, EGAA, GAGGARThr, TACU, ACC, ACA, ACGACN
Gln or Glu, ZCAA, CAG; GAA, GAGSARTrp, WUGG
Gly, GGGU, GGC, GGA, GGGGGNTyr, YUAU, UACUAY
His, HCAU, CACCAYVal, VGUU, GUC, GUA, GUGGUN
STARTAUG, CUG, UUGHUGSTOPUAA, UGA, UAGURA, UAG; or
UGA, UAR
Amino-acid biochemical propertiesNonpolar (np)Polar (p)Basic (b)Acidic (a)Termination: stop codon *Initiation: possible start codon β‡’
Standard genetic code
1st
base
2nd base3rd
base
TCAG
TTTT(Phe/F) Phenylalanine (np)TCT(Ser/S) Serine (p)TAT(Tyr/Y) Tyrosine (p)TGT(Cys/C) Cysteine (p)T
TTCTCCTACTGCC
TTA(Leu/L) Leucine (np)TCATAAStop (Ochre) *TGAStop (Opal) *A
TTG β‡’TCGTAGStop (Amber) *TGG(Trp/W) Tryptophan (np)G
CCTTCCT(Pro/P) Proline (np)CAT(His/H) Histidine (b)CGT(Arg/R) Arginine (b)T
CTCCCCCACCGCC
CTACCACAA(Gln/Q) Glutamine (p)CGAA
CTGCCGCAGCGGG
AATT(Ile/I) Isoleucine (np)ACT(Thr/T) Threonine (p)AAT(Asn/N) Asparagine (p)AGT(Ser/S) Serine (p)T
ATCACCAACAGCC
ATAACAAAA(Lys/K) Lysine (b)AGA(Arg/R) Arginine (b)A
ATG β‡’(Met/M) Methionine (np)ACGAAGAGGG
GGTT(Val/V) Valine (np)GCT(Ala/A) Alanine (np)GAT(Asp/D) Aspartic acid (a)GGT(Gly/G) Glycine (np)T
GTCGCCGACGGCC
GTAGCAGAA(Glu/E) Glutamic acid (a)GGAA
GTG β‡’GCGGAGGGGG
Inverse table for the standard genetic code (compressed using IUPAC notation)
Amino acidDNA codonsCompressedAmino acidDNA codonsCompressed
Ala, AGCT, GCC, GCA, GCGGCNIle, IATT, ATC, ATAATH
Arg, RCGT, CGC, CGA, CGG; AGA, AGGCGN, AGR; or
CGY, MGR
Leu, LCTT, CTC, CTA, CTG; TTA, TTGCTN, TTR; or
CTY, YTR
Asn, NAAT, AACAAYLys, KAAA, AAGAAR
Asp, DGAT, GACGAYMet, MATG
Asn or Asp, BAAT, AAC; GAT, GACRAYPhe, FTTT, TTCTTY
Cys, CTGT, TGCTGYPro, PCCT, CCC, CCA, CCGCCN
Gln, QCAA, CAGCARSer, STCT, TCC, TCA, TCG; AGT, AGCTCN, AGY
Glu, EGAA, GAGGARThr, TACT, ACC, ACA, ACGACN
Gln or Glu, ZCAA, CAG; GAA, GAGSARTrp, WTGG
Gly, GGGT, GGC, GGA, GGGGGNTyr, YTAT, TACTAY
His, HCAT, CACCAYVal, VGTT, GTC, GTA, GTGGTN
STARTATG, TTG, GTG, CTGNTGSTOPTAA, TGA, TAGTRA, TAR

Alternative codons in other translation tables

Further information: List of genetic codes

Scientists once thought that the genetic code was the same for all living things. They believed that a group of three letters, called a codon, would always create the same building block of a protein. But we now know that the genetic code can change over time. This means a codon can sometimes create a different building block, depending on where it is found.

For example, researchers found that certain codons like AUA, UGA, AGA, and AGG work differently in the energy factories inside our cells. Even codons that usually tell a cell to stop building a protein can change meaning. In some tiny organisms, these codons make an amino acid called glutamine instead. Scientists have also found new ways codons work in some bacteria, showing that the genetic code is not as fixed as we once thought.

Amino-acid biochemical propertiesNonpolar (np)Polar (p)Basic (b)Acidic (a)Termination: stop codon *
Comparison between codon translations with alternative and standard genetic codes
CodeTranslation
table
DNA codon involvedRNA codon involvedTranslation
with this code
Standard translation
Standard1
Vertebrate mitochondrial2AGAAGAStop *Arg (R) (b)
AGGAGGStop *Arg (R) (b)
ATAAUAMet (M) (np)Ile (I) (np)
TGAUGATrp (W) (np)Stop *
Yeast mitochondrial3ATAAUAMet (M) (np)Ile (I) (np)
CTTCUUThr (T) (p)Leu (L) (np)
CTCCUCThr (T) (p)Leu (L) (np)
CTACUAThr (T) (p)Leu (L) (np)
CTGCUGThr (T) (p)Leu (L) (np)
TGAUGATrp (W) (np)Stop *
CGACGAabsentArg (R) (b)
CGCCGCabsentArg (R) (b)
Mold, protozoan, and coelenterate mitochondrial + Mycoplasma / Spiroplasma4TGAUGATrp (W) (np)Stop *
Invertebrate mitochondrial5AGAAGASer (S) (p)Arg (R) (b)
AGGAGGSer (S) (p)Arg (R) (b)
ATAAUAMet (M) (np)Ile (I) (np)
TGAUGATrp (W) (np)Stop *
Ciliate, dasycladacean and Hexamita nuclear6TAAUAAGln (Q) (p)Stop *
TAGUAGGln (Q) (p)Stop *
Echinoderm and flatworm mitochondrial9AAAAAAAsn (N) (p)Lys (K) (b)
AGAAGASer (S) (p)Arg (R) (b)
AGGAGGSer (S) (p)Arg (R) (b)
TGAUGATrp (W) (np)Stop *
Euplotid nuclear10TGAUGACys (C) (p)Stop *
Bacterial, archaeal and plant plastid11
Alternative yeast nuclear12CTGCUGSer (S) (p)Leu (L) (np)
Ascidian mitochondrial13AGAAGAGly (G) (np)Arg (R) (b)
AGGAGGGly (G) (np)Arg (R) (b)
ATAAUAMet (M) (np)Ile (I) (np)
TGAUGATrp (W) (np)Stop *
Alternative flatworm mitochondrial14AAAAAAAsn (N) (p)Lys (K) (b)
AGAAGASer (S) (p)Arg (R) (b)
AGGAGGSer (S) (p)Arg (R) (b)
TAAUAATyr (Y) (p)Stop *
TGAUGATrp (W) (np)Stop *
Blepharisma nuclear15TAGUAGGln (Q) (p)Stop *
Chlorophycean mitochondrial16TAGUAGLeu (L) (np)Stop *
Trematode mitochondrial21TGAUGATrp (W) (np)Stop *
ATAAUAMet (M) (np)Ile (I) (np)
AGAAGASer (S)Arg (R) (b)
AGGAGGSer (S) (p)Arg (R) (b)
AAAAAAAsn (N) (p)Lys (K) (b)
Scenedesmus obliquus mitochondrial22TCAUCAStop *Ser (S) (p)
TAGUAGLeu (L) (np)Stop *
Thraustochytrium mitochondrial23TTAUUAStop *Leu (L) (np)
Pterobranchia mitochondrial24AGAAGASer (S) (p)Arg (R) (b)
AGGAGGLys (K) (b)Arg (R) (b)
TGAUGATrp (W) (np)Stop *
Candidate division SR1 and Gracilibacteria25TGAUGAGly (G) (np)Stop *
Pachysolen tannophilus nuclear26CTGCUGAla (A) (np)Leu (L) (np)
Karyorelict nuclear27TAAUAAGln (Q) (p)Stop *
TAGUAGGln (Q) (p)Stop *
TGAUGAStop *orTrp (W) (np)Stop *
Condylostoma nuclear28TAAUAAStop *orGln (Q) (p)Stop *
TAGUAGStop *orGln (Q) (p)Stop *
TGAUGAStop *orTrp (W) (np)Stop *
Mesodinium nuclear29TAAUAATyr (Y) (p)Stop *
TAGUAGTyr (Y) (p)Stop *
Peritrich nuclear30TAUAAGlu (E) (a)Stop *
TAGUAGGlu (E) (a)Stop *
Blastocrithidia nuclear31TAAUAAStop *orGlu (E) (a)Stop *
TAGUAGStop *orGlu (E) (a)Stop *
TGAUGATrp (W) (np)Stop *
Cephalodiscidae mitochondrial code33AGAAGASer (S) (p)Arg (R) (b)
AGGAGGLys (K) (b)Arg (R) (b)
TAAUAATyr (Y) (p)Stop *
TGAUGATrp (W) (np)Stop *
Enterosoma34AGGAGGMet (M) (np)Arg (R) (b)
Peptacetobacter35CGGCGGGln (Q) (p)Arg (R) (b)
Anaerococcus and Onthovivens36CGGCGGTrp (W) (np)Arg (R) (b)
Absconditabacterales37CGACGATrp (W) (np)Arg (R) (b)
CGGCGGTrp (W) (np)Arg (R) (b)
TGAUGAGly (G) (np)Stop *

Images

A beautiful butterfly perched on a flower, showcasing nature.

Related articles

This article is a child-friendly adaptation of the Wikipedia article on DNA and RNA codon tables, available under CC BY-SA 4.0.

Images from Wikimedia Commons. Tap any image to view credits and license.