DNA and RNA codon tables
Adapted from Wikipedia Β· Adventurer experience
A codon table can be used to translate a genetic code into a sequence of amino acids. When proteins are made in a cell by ribosomes, it is messenger RNA (mRNA) that directs protein synthesis. The mRNA sequence is determined by the sequence of genomic DNA. In this context, the standard genetic code is called 'translation table 1' among other tables. It can also be shown in a DNA codon table.
There are 64 different codons in the genetic code. Most of these codons specify an amino acid. Three special sequences, UAG, UGA, and UAA, known as stop codons, do not code for an amino acid. Instead, they signal the end of the protein being made. In the standard code, the sequence AUGβread as methionineβcan serve as a start codon. Along with other signals such as an initiation factor, it begins the process of making a protein. Sometimes, other codons like GUG or UUG can also act as start codons.
The standard table helps translate groups of three nucleotide letters, called triplets, into the corresponding amino acid or signal. There is also an inverse table that works the other way: if you know the amino acid, it can help figure out the possible triplet code. Because multiple codons can code for the same amino acid, special notation from the International Union of Pure and Applied Chemistry is sometimes used, called nucleic acid notation.
Translation table 1
The standard genetic code helps cells make proteins. It reads instructions from DNA and turns them into messages using a molecule called messenger RNA (mRNA). This is like a translation table. It matches sets of three letters, called codons, to special building blocks of proteins named amino acids. Table 1 shows some special start codons, GUG and UUG, that help begin this process.
| Amino-acid biochemical properties | Nonpolar (np) | Polar (p) | Basic (b) | Acidic (a) | Termination: stop codon * | Initiation: possible start codon β |
| 1st base | 2nd base | 3rd base | |||||||
|---|---|---|---|---|---|---|---|---|---|
| U | C | A | G | ||||||
| U | UUU | (Phe/F) Phenylalanine (np) | UCU | (Ser/S) Serine (p) | UAU | (Tyr/Y) Tyrosine (p) | UGU | (Cys/C) Cysteine (p) | U |
| UUC | UCC | UAC | UGC | C | |||||
| UUA | (Leu/L) Leucine (np) | UCA | UAA | Stop (Ochre) * | UGA | Stop (Opal) * | A | ||
| UUG β | UCG | UAG | Stop (Amber) * | UGG | (Trp/W) Tryptophan (np) | G | |||
| C | CUU | CCU | (Pro/P) Proline (np) | CAU | (His/H) Histidine (b) | CGU | (Arg/R) Arginine (b) | U | |
| CUC | CCC | CAC | CGC | C | |||||
| CUA | CCA | CAA | (Gln/Q) Glutamine (p) | CGA | A | ||||
| CUG | CCG | CAG | CGG | G | |||||
| A | AUU | (Ile/I) Isoleucine (np) | ACU | (Thr/T) Threonine (p) | AAU | (Asn/N) Asparagine (p) | AGU | (Ser/S) Serine (p) | U |
| AUC | ACC | AAC | AGC | C | |||||
| AUA | ACA | AAA | (Lys/K) Lysine (b) | AGA | (Arg/R) Arginine (b) | A | |||
| AUG β | (Met/M) Methionine (np) | ACG | AAG | AGG | G | ||||
| G | GUU | (Val/V) Valine (np) | GCU | (Ala/A) Alanine (np) | GAU | (Asp/D) Aspartic acid (a) | GGU | (Gly/G) Glycine (np) | U |
| GUC | GCC | GAC | GGC | C | |||||
| GUA | GCA | GAA | (Glu/E) Glutamic acid (a) | GGA | A | ||||
| GUG β | GCG | GAG | GGG | G | |||||
| Amino acid | RNA codons | Compressed | Amino acid | RNA codons | Compressed | |
|---|---|---|---|---|---|---|
| Ala, A | GCU, GCC, GCA, GCG | GCN | Ile, I | AUU, AUC, AUA | AUH | |
| Arg, R | CGU, CGC, CGA, CGG; AGA, AGG | CGN, AGR; or CGY, MGR | Leu, L | CUU, CUC, CUA, CUG; UUA, UUG | CUN, UUR; or CUY, YUR | |
| Asn, N | AAU, AAC | AAY | Lys, K | AAA, AAG | AAR | |
| Asp, D | GAU, GAC | GAY | Met, M | AUG | ||
| Asn or Asp, B | AAU, AAC; GAU, GAC | RAY | Phe, F | UUU, UUC | UUY | |
| Cys, C | UGU, UGC | UGY | Pro, P | CCU, CCC, CCA, CCG | CCN | |
| Gln, Q | CAA, CAG | CAR | Ser, S | UCU, UCC, UCA, UCG; AGU, AGC | UCN, AGY | |
| Glu, E | GAA, GAG | GAR | Thr, T | ACU, ACC, ACA, ACG | ACN | |
| Gln or Glu, Z | CAA, CAG; GAA, GAG | SAR | Trp, W | UGG | ||
| Gly, G | GGU, GGC, GGA, GGG | GGN | Tyr, Y | UAU, UAC | UAY | |
| His, H | CAU, CAC | CAY | Val, V | GUU, GUC, GUA, GUG | GUN | |
| START | AUG, CUG, UUG | HUG | STOP | UAA, UGA, UAG | URA, UAG; or UGA, UAR | |
| Amino-acid biochemical properties | Nonpolar (np) | Polar (p) | Basic (b) | Acidic (a) | Termination: stop codon * | Initiation: possible start codon β |
| 1st base | 2nd base | 3rd base | |||||||
|---|---|---|---|---|---|---|---|---|---|
| T | C | A | G | ||||||
| T | TTT | (Phe/F) Phenylalanine (np) | TCT | (Ser/S) Serine (p) | TAT | (Tyr/Y) Tyrosine (p) | TGT | (Cys/C) Cysteine (p) | T |
| TTC | TCC | TAC | TGC | C | |||||
| TTA | (Leu/L) Leucine (np) | TCA | TAA | Stop (Ochre) * | TGA | Stop (Opal) * | A | ||
| TTG β | TCG | TAG | Stop (Amber) * | TGG | (Trp/W) Tryptophan (np) | G | |||
| C | CTT | CCT | (Pro/P) Proline (np) | CAT | (His/H) Histidine (b) | CGT | (Arg/R) Arginine (b) | T | |
| CTC | CCC | CAC | CGC | C | |||||
| CTA | CCA | CAA | (Gln/Q) Glutamine (p) | CGA | A | ||||
| CTG | CCG | CAG | CGG | G | |||||
| A | ATT | (Ile/I) Isoleucine (np) | ACT | (Thr/T) Threonine (p) | AAT | (Asn/N) Asparagine (p) | AGT | (Ser/S) Serine (p) | T |
| ATC | ACC | AAC | AGC | C | |||||
| ATA | ACA | AAA | (Lys/K) Lysine (b) | AGA | (Arg/R) Arginine (b) | A | |||
| ATG β | (Met/M) Methionine (np) | ACG | AAG | AGG | G | ||||
| G | GTT | (Val/V) Valine (np) | GCT | (Ala/A) Alanine (np) | GAT | (Asp/D) Aspartic acid (a) | GGT | (Gly/G) Glycine (np) | T |
| GTC | GCC | GAC | GGC | C | |||||
| GTA | GCA | GAA | (Glu/E) Glutamic acid (a) | GGA | A | ||||
| GTG β | GCG | GAG | GGG | G | |||||
| Amino acid | DNA codons | Compressed | Amino acid | DNA codons | Compressed | |
|---|---|---|---|---|---|---|
| Ala, A | GCT, GCC, GCA, GCG | GCN | Ile, I | ATT, ATC, ATA | ATH | |
| Arg, R | CGT, CGC, CGA, CGG; AGA, AGG | CGN, AGR; or CGY, MGR | Leu, L | CTT, CTC, CTA, CTG; TTA, TTG | CTN, TTR; or CTY, YTR | |
| Asn, N | AAT, AAC | AAY | Lys, K | AAA, AAG | AAR | |
| Asp, D | GAT, GAC | GAY | Met, M | ATG | ||
| Asn or Asp, B | AAT, AAC; GAT, GAC | RAY | Phe, F | TTT, TTC | TTY | |
| Cys, C | TGT, TGC | TGY | Pro, P | CCT, CCC, CCA, CCG | CCN | |
| Gln, Q | CAA, CAG | CAR | Ser, S | TCT, TCC, TCA, TCG; AGT, AGC | TCN, AGY | |
| Glu, E | GAA, GAG | GAR | Thr, T | ACT, ACC, ACA, ACG | ACN | |
| Gln or Glu, Z | CAA, CAG; GAA, GAG | SAR | Trp, W | TGG | ||
| Gly, G | GGT, GGC, GGA, GGG | GGN | Tyr, Y | TAT, TAC | TAY | |
| His, H | CAT, CAC | CAY | Val, V | GTT, GTC, GTA, GTG | GTN | |
| START | ATG, TTG, GTG, CTG | NTG | STOP | TAA, TGA, TAG | TRA, TAR | |
Alternative codons in other translation tables
Further information: List of genetic codes
Scientists once thought that the genetic code was the same for all living things. They believed that a group of three letters, called a codon, would always create the same building block of a protein. But we now know that the genetic code can change over time. This means a codon can sometimes create a different building block, depending on where it is found.
For example, researchers found that certain codons like AUA, UGA, AGA, and AGG work differently in the energy factories inside our cells. Even codons that usually tell a cell to stop building a protein can change meaning. In some tiny organisms, these codons make an amino acid called glutamine instead. Scientists have also found new ways codons work in some bacteria, showing that the genetic code is not as fixed as we once thought.
| Amino-acid biochemical properties | Nonpolar (np) | Polar (p) | Basic (b) | Acidic (a) | Termination: stop codon * |
| Code | Translation table | DNA codon involved | RNA codon involved | Translation with this code | Standard translation | ||
|---|---|---|---|---|---|---|---|
| Standard | 1 | ||||||
| Vertebrate mitochondrial | 2 | AGA | AGA | Stop * | Arg (R) (b) | ||
| AGG | AGG | Stop * | Arg (R) (b) | ||||
| ATA | AUA | Met (M) (np) | Ile (I) (np) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Yeast mitochondrial | 3 | ATA | AUA | Met (M) (np) | Ile (I) (np) | ||
| CTT | CUU | Thr (T) (p) | Leu (L) (np) | ||||
| CTC | CUC | Thr (T) (p) | Leu (L) (np) | ||||
| CTA | CUA | Thr (T) (p) | Leu (L) (np) | ||||
| CTG | CUG | Thr (T) (p) | Leu (L) (np) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| CGA | CGA | absent | Arg (R) (b) | ||||
| CGC | CGC | absent | Arg (R) (b) | ||||
| Mold, protozoan, and coelenterate mitochondrial + Mycoplasma / Spiroplasma | 4 | TGA | UGA | Trp (W) (np) | Stop * | ||
| Invertebrate mitochondrial | 5 | AGA | AGA | Ser (S) (p) | Arg (R) (b) | ||
| AGG | AGG | Ser (S) (p) | Arg (R) (b) | ||||
| ATA | AUA | Met (M) (np) | Ile (I) (np) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Ciliate, dasycladacean and Hexamita nuclear | 6 | TAA | UAA | Gln (Q) (p) | Stop * | ||
| TAG | UAG | Gln (Q) (p) | Stop * | ||||
| Echinoderm and flatworm mitochondrial | 9 | AAA | AAA | Asn (N) (p) | Lys (K) (b) | ||
| AGA | AGA | Ser (S) (p) | Arg (R) (b) | ||||
| AGG | AGG | Ser (S) (p) | Arg (R) (b) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Euplotid nuclear | 10 | TGA | UGA | Cys (C) (p) | Stop * | ||
| Bacterial, archaeal and plant plastid | 11 | ||||||
| Alternative yeast nuclear | 12 | CTG | CUG | Ser (S) (p) | Leu (L) (np) | ||
| Ascidian mitochondrial | 13 | AGA | AGA | Gly (G) (np) | Arg (R) (b) | ||
| AGG | AGG | Gly (G) (np) | Arg (R) (b) | ||||
| ATA | AUA | Met (M) (np) | Ile (I) (np) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Alternative flatworm mitochondrial | 14 | AAA | AAA | Asn (N) (p) | Lys (K) (b) | ||
| AGA | AGA | Ser (S) (p) | Arg (R) (b) | ||||
| AGG | AGG | Ser (S) (p) | Arg (R) (b) | ||||
| TAA | UAA | Tyr (Y) (p) | Stop * | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Blepharisma nuclear | 15 | TAG | UAG | Gln (Q) (p) | Stop * | ||
| Chlorophycean mitochondrial | 16 | TAG | UAG | Leu (L) (np) | Stop * | ||
| Trematode mitochondrial | 21 | TGA | UGA | Trp (W) (np) | Stop * | ||
| ATA | AUA | Met (M) (np) | Ile (I) (np) | ||||
| AGA | AGA | Ser (S) | Arg (R) (b) | ||||
| AGG | AGG | Ser (S) (p) | Arg (R) (b) | ||||
| AAA | AAA | Asn (N) (p) | Lys (K) (b) | ||||
| Scenedesmus obliquus mitochondrial | 22 | TCA | UCA | Stop * | Ser (S) (p) | ||
| TAG | UAG | Leu (L) (np) | Stop * | ||||
| Thraustochytrium mitochondrial | 23 | TTA | UUA | Stop * | Leu (L) (np) | ||
| Pterobranchia mitochondrial | 24 | AGA | AGA | Ser (S) (p) | Arg (R) (b) | ||
| AGG | AGG | Lys (K) (b) | Arg (R) (b) | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Candidate division SR1 and Gracilibacteria | 25 | TGA | UGA | Gly (G) (np) | Stop * | ||
| Pachysolen tannophilus nuclear | 26 | CTG | CUG | Ala (A) (np) | Leu (L) (np) | ||
| Karyorelict nuclear | 27 | TAA | UAA | Gln (Q) (p) | Stop * | ||
| TAG | UAG | Gln (Q) (p) | Stop * | ||||
| TGA | UGA | Stop * | or | Trp (W) (np) | Stop * | ||
| Condylostoma nuclear | 28 | TAA | UAA | Stop * | or | Gln (Q) (p) | Stop * |
| TAG | UAG | Stop * | or | Gln (Q) (p) | Stop * | ||
| TGA | UGA | Stop * | or | Trp (W) (np) | Stop * | ||
| Mesodinium nuclear | 29 | TAA | UAA | Tyr (Y) (p) | Stop * | ||
| TAG | UAG | Tyr (Y) (p) | Stop * | ||||
| Peritrich nuclear | 30 | TA | UAA | Glu (E) (a) | Stop * | ||
| TAG | UAG | Glu (E) (a) | Stop * | ||||
| Blastocrithidia nuclear | 31 | TAA | UAA | Stop * | or | Glu (E) (a) | Stop * |
| TAG | UAG | Stop * | or | Glu (E) (a) | Stop * | ||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Cephalodiscidae mitochondrial code | 33 | AGA | AGA | Ser (S) (p) | Arg (R) (b) | ||
| AGG | AGG | Lys (K) (b) | Arg (R) (b) | ||||
| TAA | UAA | Tyr (Y) (p) | Stop * | ||||
| TGA | UGA | Trp (W) (np) | Stop * | ||||
| Enterosoma | 34 | AGG | AGG | Met (M) (np) | Arg (R) (b) | ||
| Peptacetobacter | 35 | CGG | CGG | Gln (Q) (p) | Arg (R) (b) | ||
| Anaerococcus and Onthovivens | 36 | CGG | CGG | Trp (W) (np) | Arg (R) (b) | ||
| Absconditabacterales | 37 | CGA | CGA | Trp (W) (np) | Arg (R) (b) | ||
| CGG | CGG | Trp (W) (np) | Arg (R) (b) | ||||
| TGA | UGA | Gly (G) (np) | Stop * | ||||
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